SRR003161h20.fastq <span style="font-family: Arial,Helvetica,sans-serif; font-size: 12px; background-color: rgb(255,255,255);">三次测试:</span>
hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq >SRR003161h20BWASWchr1.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq [main] Real time: 0.315 sec; CPU: 0.257 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq >SRR003161h20BWASWchr1.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq [main] Real time: 0.306 sec; CPU: 0.251 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq >SRR003161h20BWASWchr1.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1L3556522.fna SRR003161h20.fastq [main] Real time: 0.312 sec; CPU: 0.253 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq >SRR003161h20BWASWchr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq [main] Real time: 0.293 sec; CPU: 0.239 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq >SRR003161h20BWASWchr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq [main] Real time: 0.287 sec; CPU: 0.238 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq >SRR003161h20BWASWchr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr2L3459909.fna SRR003161h20.fastq [main] Real time: 0.293 sec; CPU: 0.240 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq >SRR003161h20BWASWchr1chr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq [main] Real time: 0.693 sec; CPU: 0.598 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq >SRR003161h20BWASWchr1chr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq [main] Real time: 0.646 sec; CPU: 0.588 sec hadoop@Master:~/cloud/adam/xubo/data/GRCH38Sub$ bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq >SRR003161h20BWASWchr1chr2.sam [M::bwa_idx_load_from_disk] read 0 ALT contigs [bsw2_aln] read 5 sequences/pairs (2691 bp) ... [main] Version: 0.7.13-r1126 [main] CMD: bwa bwasw GRCH38chr1chr2L7016431.fna SRR003161h20.fastq [main] Real time: 0.639 sec; CPU: 0.582 sec
只对两个串比较,时间较短,差不多查找比对时间可以减半